PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G253600.1
Common NamePHAVU_008G253600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 303aa    MW: 34412.7 Da    PI: 6.1213
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G253600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23e-163594155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  Phvul.008G253600.1 35 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqsKKgRQVYLGAYDDEEAAARAYDLAALKYWG 94
                        57*******************999977777557*************************98 PP

2AP252.71e-16137189156
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g+
  Phvul.008G253600.1 137 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRGA 189
                         89****99**********99966...3.6*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-123594IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1735103IPR016177DNA-binding domain
SMARTSM003803.3E-2836108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1636103IPR001471AP2/ERF domain
PROSITE profilePS5103220.58736102IPR001471AP2/ERF domain
PRINTSPR003671.3E-63748IPR001471AP2/ERF domain
PfamPF008474.3E-12137188IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18137198IPR016177DNA-binding domain
CDDcd000181.46E-15137198No hitNo description
SMARTSM003801.9E-24138202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18138197IPR001471AP2/ERF domain
PROSITE profilePS5103218.255138196IPR001471AP2/ERF domain
PRINTSPR003671.3E-6178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAKRSQKALK NTDTNSTAKR TRKTVPRDSP PQRSSIYRGV TRHRWTGRYE AHLWDKNCWN  60
ESQSKKGRQV YLGAYDDEEA AARAYDLAAL KYWGQDTILN FPLTNYEEML KEMEGQSKEE  120
YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAAAAYD  180
MAAIEYRGAN AVTNFDVSRY INWPGPKSEE ENQNVPVNEN VNSNAEIELG FVSHEHGSKS  240
DEITTEDAAQ SSESNPSRRT FPEDIQTIFE SQGPDIYTEN DDIIFGDLGS FGASIFHYEL  300
DV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-149AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142112.10.0hypothetical protein PHAVU_008G253600g
SwissprotQ94AN41e-119AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV7BCB20.0V7BCB2_PHAVU; Uncharacterized protein
STRINGGLYMA07G02380.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-104ARIA-interacting double AP2 domain protein